They all do, you just need to open up the damper and restack the shims. It's a simple 15-20 minute procedure, and Manitou even has a nice tuning guide complete with dyno charts.
https://docs.google.com/file/d/0B-s...file/d/0B-s3OzrP-sd0ZWI4MjdkZDEtNTcyYS00MDhmLThhMmUtMDM2ZGFlNGUwZGQw/edit?pli=1
I wouldn't say that either one is inherently more suited for use in longer or shorter travel forks, what makes them different is the tuning possibilities in terms of the overall spring curve. MARS Air allows you to make fairly large changes in the shape of the spring curve by changing the coil spring along with adding or removing oil on top of the air piston and fiddling with air pressure. Unfortunately it also results in exponentially more ways to get things wrong and end up with a poorly sprung fork. ISO and TS Air don't have as many tuning options which makes them easier to get right. It's just a matter of adding air and possibly adjusting the oil volume on top of the air piston.
IMO the MARS and ISO Air systems are close enough that it doesn't matter for most riders, how the dampers are tuned will have a larger effect than the spring system. I own the Minute Pro (MARS) and have ridden the Marvel (ISO), my Minute is a bit smoother but it does have a custom tuned shim stack in the compression damper whereas the Marvel was factory stock.