I take it back. I think I should have given you different advice. Sorry!
Try running them flush first. IF you have vibration/squealing problems then use toe as your first solution to correct.
I did a pad swap on my bike today. Out with the old Shimano W&D pads (why is it even legal to sell these?

) and put on a pair of Kool Stop (grey compound) pads - flush mounted. I tried a panic stop and endo'd the bike for about 20'. So after I cleaned my underwear..... The funny thing is that my old Avid cantis (horrible little things) always gave me problems flush mounted. I had to toe them like a mad man to get it to stop.
Flush first - toe if needed. Apologies on the confusion. I just don't like to give people poor advice.