depends
A properly built 29er wheel will be as trouble free as a 26er. You can make them stiff and durable with a weight penalty. The problem is people want 29er wheels that are as light as their old 26ers. This of course cannot happen without sacrificing durability. Smart manufacturers are not buckling to the pressure to build them as light as 26er wheelsets. Savy consumers understand that a 29er will naturally be proportionately heavier than a similiar 26 wheel set. Long story short: a reasonable and proper 29 wheelset (which are out there) will perform and take the abuse of a 26er.
A properly built 29er wheel will be as trouble free as a 26er. You can make them stiff and durable with a weight penalty. The problem is people want 29er wheels that are as light as their old 26ers. This of course cannot happen without sacrificing durability. Smart manufacturers are not buckling to the pressure to build them as light as 26er wheelsets. Savy consumers understand that a 29er will naturally be proportionately heavier than a similiar 26 wheel set. Long story short: a reasonable and proper 29 wheelset (which are out there) will perform and take the abuse of a 26er.