If I had $1K to spend on a HT 29er right now it would be the Motobecane Fantom Pro Excellent parts kit. I don't think anything come close for less than $1500 from the competition. You would need the 21in. Compared to what you could cobble together for $1000 piece by piece it is a far superior build kit.
As far as the tools go, for 90% of my wrenching all that is needed is metric allens and metric box end wrenches. I recommend Bondhus on the allens and craftsman on the box ends.
As far as the tools go, for 90% of my wrenching all that is needed is metric allens and metric box end wrenches. I recommend Bondhus on the allens and craftsman on the box ends.