I had similar issues with my Avid Elixir CRs. It was very hard to do a bleed without some air always getting into the levers. And I could do good bleeds with other brand brakes no problems. I think both Elixirs and Code Rs had similar design issues. Someone online once said that at the step where you still have the top syringe attached to the leaver, and you pull on the syringe plunger to create vacuum to get any last bubbles out, if you pull too hard, the piston seals in the levers will let air get past them (air will enter behind the lever, past the plungers). Those master cylinder piston seals were designed and tested to lock in pressure when you pull on the lever during normal brake operation, but they could not keep air out if you created too much vacuum inside the lever during the bleed. So if you are too avid with this step (pun intended) this could be your problem. I was able to get good bleeds once I dialed down the tugging on the lever syringe plunger.