i wouldnt be so sure that is the cause of the creaking
For me it is absolutely a source of creaking. In fact, it sounds liked a cracked frame each time it loosened. But I tightened it for 3 weeks on rides before moving and replacing with Loctite. What they used form the factory is a weird foam substance that does not hold.
For the most part, this bike is extremely silent other than three main points (especially compared to the previous generation Top fuel. Each time something starts making noise, it seems to be the same pesky things.
1. The lower pivot bolt (SOUNDS LIKE A CRACKED FRAME) comes out on most bikes when new. Trek should offer a TSB and have all bike shops remove and replace the bolt with proper threadlock. Your average Joe does not know how to do this and is likely to ride the bike until it falls out.
2. The rocker bolt loosens over time. (annoying faint creak/pop under pedaling loads and some braking) Mine comes loose about every few months. It doesn't back out, but it becomes about 1/2-1 turn out form 16 nm. Then it requires new Loctite from my experience. It manifested again last Friday and took me a week to really figure out the source which I fixed last night (again). I had cleaned the Rocker after a muddy race in December and didn't do the best job of letting the Loctite set before torqueing to spec
3. Shock squeak under pedaling (sounds like a rubber squeak because that's what it is) You think its coming from the bushing but it is in fact the seals. especially if you run open bottles with carb mix, this seems to be more a problem over time. FIX: service your shock with a 20 dollar seal kit. almost anyone can do this if they dive in. you may need a cheap strap wrench and possibly something that can act as a vice. A cheap set of picks may help..
4*. Bottle cage rattle. Cage Bosses were not properly tightened form the factory. Its an issue if you ride rocky terrain and run large bottles. You can fix this yourself with a long m5 bolt and an M6 flange nut!